Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120348.Seq
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.7  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   6.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   SLFLLLFCK*ITLSFNICLCLIFFLRVHPVLVC 106
           ++ LL +C  I  + +  LC  +F     +L+C
Sbjct: 80  TVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLC 112



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 6   IVYFYYCFVNK*LYHSISVCV*FSFCAYTQCWYAFPFFS 122
           I YFYY F+   ++  + VC+ + +  +     AF  F+
Sbjct: 238 IYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFT 276



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 9   VYFYYC-FVNK*LYHSISVCV*FSFCAY 89
           +Y++YC F+   ++    +C+   FCA+
Sbjct: 146 IYYFYCAFIIFTVHLLFLLCIYHFFCAF 173


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 212 NCLT*SRPNLKRNLSTIF 159
           N L+ + P LKRN  TIF
Sbjct: 85  NILSSAFPRLKRNARTIF 102


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 664 FNDGVVKAQTDPFALKRGGHNVQKWTSYA 578
           F D V +A   PF +      + K+ S+A
Sbjct: 121 FKDLVAEAYVSPFRIDNESQELLKYPSFA 149


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 469 EKLNVLFLTLLGKFPLKNLLV 531
           EKLN L ++++ ++P   LLV
Sbjct: 16  EKLNTLAISVMNQWPGVRLLV 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,963
Number of Sequences: 336
Number of extensions: 4244
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)