Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120348.Seq
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.6  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   5.6  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   9.7  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 342 VYCVVEQLCQIFCLQSNLFALLHQIADAGHVRVQRVKQM 458
           V C V  LC+++C+  +  +    I D   + V  V+ M
Sbjct: 36  VVCFVSVLCRLYCILMSAASATQTICDQSILHVHGVENM 74


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 615 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 737
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 586 SYALFKLFKEFRINKNYSKLIDFLTEIFPTTSKTKR 479
           S  L + F E  I KNY+ L+D + E+   T   +R
Sbjct: 310 SSLLARTFNEICIEKNYTDLLDKMPEVVQLTYYIER 345


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 40  NFIIQYLSVFD--FLFARTPSVGMLFLFF 120
           +FI ++ S+     LFA T SVG LF+FF
Sbjct: 226 SFINRHPSILKDMLLFACTGSVGQLFIFF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,063
Number of Sequences: 5004
Number of extensions: 71018
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)