Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120348.Seq
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1307 - 35597323-35597533,35597618-35597796,35598056-355981...    29   5.8  
01_07_0229 + 42161770-42164562                                         29   5.8  
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075...    28   7.7  
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    28   7.7  

>02_05_1307 -
           35597323-35597533,35597618-35597796,35598056-35598145,
           35598629-35598727,35598987-35599053,35599136-35599235,
           35599408-35599543,35599594-35599694,35599795-35599869,
           35599905-35600217
          Length = 456

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = -1

Query: 518 FNGNFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDLVKERKQIRLQTEYLAKLFNNTIND 339
           F G+  ++ KN     S +  L  +L  Y+P++  LVK+  ++  + ++      +    
Sbjct: 91  FYGSSSDDKKNNVRGGSKSADLLQALEDYLPTLLGLVKDGSELEDKVQFAWMNQEDDAEV 150

Query: 338 FKLYTELYEFI 306
           + L   L++F+
Sbjct: 151 YMLLCVLFDFL 161


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 635 CLRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYV 742
           CL+LN  +IK   + + +   LKYL      F E +
Sbjct: 556 CLKLNQTLIKSLPVAIGQLTKLKYLNLSYMDFLEKI 591


>03_06_0133 -
           31906305-31906582,31906820-31907105,31907442-31907566,
           31907645-31907759,31907852-31908485,31911425-31911555,
           31912308-31912397,31912440-31912486,31913707-31913761,
           31914576-31914908,31915278-31915337,31915427-31915618,
           31916149-31916220,31916307-31916435
          Length = 848

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -2

Query: 202 HKAAQI*KGTFRQYSLQVFPKLQKFIVEKKGKAYQHWVYAQKENQ 68
           +KA+++ +G+ +  +L     LQKF+V K     Q+W  AQ+E+Q
Sbjct: 751 YKASKVGRGS-QGGTLPNMGILQKFLVPKDQLCRQYWKKAQEESQ 794


>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 617 LQSKWICLRLNDAIIKRHVLVLSEYADLKYLGFE 718
           LQ  W   RL + I+KR  +    + DLKYL  E
Sbjct: 860 LQPSWGFQRLKEEIVKRFGISQDTHVDLKYLDDE 893


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,993,756
Number of Sequences: 37544
Number of extensions: 387207
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)