Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120348.Seq
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical pr... 26 1.2
X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2 p... 30 1.7
U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family... 30 1.7
U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alph... 30 1.7
AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeri... 30 1.7
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 30 1.7
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 30 1.7
U49830-14|AAK31479.1| 182|Caenorhabditis elegans Hypothetical p... 28 7.0
AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical... 28 9.2
>Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical
protein F26F2.6 protein.
Length = 611
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 615 RFKANGSVCALTTPSLNDMFSF*A-STQTSNT 707
+ K + + C TTP L D F F ST+ S T
Sbjct: 246 KMKVDETTCLFTTPQLLDSFKFGTQSTEPSTT 277
Score = 23.4 bits (48), Expect(2) = 1.2
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 240 SC*IDLVQ*LARTTAIDTFGPFDKLVQLSVQFEIVY-CVVEQLCQIFCLQSNLFALLHQI 416
+C + +VQ A+ +T P D Q+S E ++ C E+ CQI L S+ +
Sbjct: 168 NCSVTMVQDYAKPGP-ETVKPRD--AQISNWDECMHMCYEEEECQIAYLDSDAKKCVWYS 224
Query: 417 ADAGHVRVQRVKQMAGRRKVERFVFD 494
+D G + + +G+R V + D
Sbjct: 225 SDDGLTFMNKSSADSGKRLVIKMKVD 250
>X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2
protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 577 LFKLFKEFRINKNYSKLIDFLTEIFPTTSKTKRSTFRLPAICFT 446
+ K F E+R +NY++ + F+ F S + TF + C T
Sbjct: 286 IHKAFPEYRGEQNYAETVAFIKTKFEALSNNPKKTFYVHETCAT 329
>U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family
protein 4 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 578 GVTGPFLHIMASSLQSKWICLRLNDAIIKRHVLVL 682
GV G +H++ + + + + +R+ND ++ +HV +L
Sbjct: 157 GVVGKMMHLLLCNNREEGLGVRVNDELVDKHVKIL 191
>U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alpha
subunit protein 2 protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 577 LFKLFKEFRINKNYSKLIDFLTEIFPTTSKTKRSTFRLPAICFT 446
+ K F E+R +NY++ + F+ F S + TF + C T
Sbjct: 286 IHKAFPEYRGEQNYAETVAFIKTKFEALSNNPKKTFYVHETCAT 329
>AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 577 LFKLFKEFRINKNYSKLIDFLTEIFPTTSKTKRSTFRLPAICFT 446
+ K F E+R +NY++ + F+ F S + TF + C T
Sbjct: 286 IHKAFPEYRGEQNYAETVAFIKTKFEALSNNPKKTFYVHETCAT 329
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 497 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 324
NVKN + S HL LH Y S ++ ++RK +Y ++ N + D + Y
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350
Query: 323 ELYEFIERTEGVDCCCPCQLL 261
E TE + CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 497 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 324
NVKN + S HL LH Y S ++ ++RK +Y ++ N + D + Y
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350
Query: 323 ELYEFIERTEGVDCCCPCQLL 261
E TE + CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371
>U49830-14|AAK31479.1| 182|Caenorhabditis elegans Hypothetical
protein C33F10.11 protein.
Length = 182
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 402 LLHQIADAGHVRVQRVKQMAGRRKVERFVFDVV 500
+L + ADA HVRV R+ + + FV+ +V
Sbjct: 101 ILEEDADASHVRVMRIAGFIAQSTIFLFVYTIV 133
>AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical
protein W08F4.10 protein.
Length = 124
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 443 LHAYVPSVSDLVKERKQIRLQTEYLAKLFNNTINDFKLYTELYEFIERTEGVD 285
+ AY D +++ +Q EYL++ +N+F Y + E ++ +EG D
Sbjct: 37 VQAYSSLTLDKLRKMNCETIQFEYLSEFSGTHLNEFIRYCDGLEVVDCSEGRD 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,645,949
Number of Sequences: 27780
Number of extensions: 396902
Number of successful extensions: 1176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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