Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120348.Seq
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23060.1 68417.m03325 calmodulin-binding family protein conta...    29   4.9  
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr...    29   4.9  

>At4g23060.1 68417.m03325 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 543

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 511 EIFPTTSKTKRSTFRLPAICFTRCTRTC 428
           +++  TS++KRS F   +I  + CT++C
Sbjct: 428 QLYSATSRSKRSAFTASSIAPSDCTKSC 455


>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 260

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 509 NFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDLVKERKQI 390
           +FP N  + + NFSST    HS H    ++ D  K+RK +
Sbjct: 61  HFPGNSPDSSNNFSSTSSFLHSDH----NIVDETKKRKAL 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,788
Number of Sequences: 28952
Number of extensions: 343028
Number of successful extensions: 846
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)