Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120347.Seq
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25806 Cluster: Rpl23 protein; n=1; Plasmodium falcipar...    33   4.8  
UniRef50_P22525 Cluster: Uncharacterized protein ycbB; n=27; Ent...    33   6.4  
UniRef50_A2QUI4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q25806 Cluster: Rpl23 protein; n=1; Plasmodium
           falciparum|Rep: Rpl23 protein - Plasmodium falciparum
          Length = 75

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -1

Query: 167 IIVSIKYYRQKYLNSFPIQSTA*FKLYNFNKILNKNINERECVNKH 30
           II SIKY+ +  +  + I++    KL N+N I   NIN++ C+ K+
Sbjct: 26  IIYSIKYFTKLDIK-YIIKNIFKIKLINYNNIKINNINKKNCLKKY 70


>UniRef50_P22525 Cluster: Uncharacterized protein ycbB; n=27;
           Enterobacteriaceae|Rep: Uncharacterized protein ycbB -
           Escherichia coli (strain K12)
          Length = 615

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 550 PGRRQRLSRTNLNALSSYFLSLHDKK*HLIFKTNTFS*PNKGCLYIYTSSFLSRKL 383
           PG R  L R   N  SS  + LHD   H +FK +T +  + GC+ +  +S L+  L
Sbjct: 487 PGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRA-LSSGCVRVNKASDLANML 541


>UniRef50_A2QUI4 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 325

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 326 LSCLKFIYSISVFSIEFALKLAR 394
           LSCL+F+YSI V   +F+L LAR
Sbjct: 151 LSCLEFLYSIQVIGSDFSLLLAR 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,958,603
Number of Sequences: 1657284
Number of extensions: 10972870
Number of successful extensions: 22327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22318
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)