Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120347.Seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    31   0.20 
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   7.6  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 413 YVETSFIRLTECVCFEN*MSLFVVQREEIGRQRVKIRPGQPLAPARSR 556
           +++T++++   C C  N +SL ++ ++     ++   PG PL P+ SR
Sbjct: 661 FLQTNYLKNLLCCCITNLVSLAILSKDHSANLKIVEIPGNPL-PSLSR 707


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 167 IIVSIKYYRQKYLNSFPIQ 111
           I+V+IK +RQ +++ FPI+
Sbjct: 151 IVVTIKMFRQAFVDVFPIR 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,373
Number of Sequences: 5004
Number of extensions: 51508
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)