Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120347.Seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261     29   4.5  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    29   4.5  
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665...    28   6.0  

>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
          Length = 326

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 547 GRRQRLSRTNLNALSSYFLSLHDKK 473
           GRR+R     + A   YF SLHD+K
Sbjct: 73  GRRRREDAARVGATEWYFFSLHDRK 97


>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
            17793562-17793620,17794135-17795637,17796478-17796720,
            17796831-17797145,17797571-17797573,17798399-17798638,
            17798975-17799259,17799335-17799556,17800105-17800266,
            17800411-17800545,17802452-17802688,17802787-17802960,
            17803692-17803934
          Length = 1384

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 456  LKIKCHFLSCKERK*DDSALRFVRDNRWRRPGVAITFT 569
            LK+ C+F+  ++     + + F  +NRWR+ G+A+  T
Sbjct: 1023 LKVSCNFMEARK-----AVIDFNNNNRWRKRGIAMVPT 1055


>08_02_0162 +
           13464698-13464974,13465719-13465837,13465920-13466579,
           13466686-13466763,13466849-13466938,13467241-13467378,
           13467730-13467738
          Length = 456

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 444 SVSLIKDVSTYIHLAFYRASFKANSIENTLIE*INFKQDNVKPISLL 304
           SV + +DV+T + L +   +F + +     +E +NF   N KPI ++
Sbjct: 67  SVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLNFTPINGKPIRIM 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,979
Number of Sequences: 37544
Number of extensions: 270776
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)