Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120347.Seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               29   3.5  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      29   4.6  

>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 260 VYSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           +Y   I++ ++C+Q   EI L L+C++++Y I
Sbjct: 67  LYLYEIWLILACMQYLYEIWLVLACMQYLYEI 98



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 YSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           Y   I++ ++C+Q   EI L L+C++++Y I
Sbjct: 3   YLYEIWLILACMQYLYEIWLVLACMQYLYEI 33



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 263 YSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           Y   I++ ++C+Q   EI L L+C+ ++Y I
Sbjct: 16  YLYEIWLVLACMQYLYEIWLVLACMLYLYEI 46



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 263 YSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           Y   I++ ++C+Q   EI L L+C+ ++Y I
Sbjct: 81  YLYEIWLVLACMQYLYEIWLVLACMLYLYEI 111


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 260 VYSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           +Y   I++ ++C+Q   EI L L+C+ ++Y I
Sbjct: 276 LYLYEIWLILACMQYLYEIWLVLACMLYLYEI 307



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 260 VYSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           +Y   I++ ++C+Q   EI L L+C+ ++Y I
Sbjct: 28  LYLYEIWLVLACMQYLYEIRLILACMLYLYEI 59



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 260 VYSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           +Y   I + ++C+Q   EI L L+C++++Y I
Sbjct: 484 LYLYEIRLVLACMQYLYEIRLVLACMQYLYEI 515



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 260 VYSVLIYIFMSCIQSNNEIGLTLSCLKFIYSI 355
           +Y   I + + C+Q   EI L L+C++++Y I
Sbjct: 106 LYLYEIRLVLGCMQYLYEIRLVLACMQYLYEI 137


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 504 DSALRFVRDNRWRRPGVAITFT 569
           +SA  F R NRW++ G+A+T T
Sbjct: 483 ESAAEFNRQNRWKKRGIALTPT 504


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 552 VAITFTYPLIVNHNEYCNGTSSDVN 626
           V+IT  YPL+ +H  +C+  S+ VN
Sbjct: 211 VSITCHYPLLFHHTTHCHHLSASVN 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,650
Number of Sequences: 59808
Number of extensions: 373774
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)