Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120347.Seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical p...    29   4.0  
U67967-1|AAC47829.1|  413|Caenorhabditis elegans PTL-1B protein ...    28   7.0  
U67966-1|AAB97090.1|  453|Caenorhabditis elegans PTL-1A protein ...    28   7.0  
U38983-1|AAA80687.1|  436|Caenorhabditis elegans TAU-1b protein.       28   7.0  
U38982-1|AAA80686.1|  431|Caenorhabditis elegans TAU-1a protein.       28   7.0  
U00051-5|AAM29696.1|  252|Caenorhabditis elegans Protein with ta...    28   7.0  
U00051-4|AAK70645.1|  453|Caenorhabditis elegans Protein with ta...    28   7.0  
U00051-3|AAK70647.1|  413|Caenorhabditis elegans Protein with ta...    28   7.0  
U00051-2|AAK70646.1|  458|Caenorhabditis elegans Protein with ta...    28   7.0  

>U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical
           protein F21F8.11 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 251 R*HVYSVLIYIFMSCIQSNNEIGLTLSCL 337
           R HV  +L+Y F    Q    IGL+LSC+
Sbjct: 24  RLHVVLMLMYAFFCMCQMTAHIGLSLSCM 52


>U67967-1|AAC47829.1|  413|Caenorhabditis elegans PTL-1B protein
           protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 253 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 300


>U67966-1|AAB97090.1|  453|Caenorhabditis elegans PTL-1A protein
           protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 253 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 300


>U38983-1|AAA80687.1|  436|Caenorhabditis elegans TAU-1b protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 231 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 278


>U38982-1|AAA80686.1|  431|Caenorhabditis elegans TAU-1a protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 231 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 278


>U00051-5|AAM29696.1|  252|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform d protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 105 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 152


>U00051-4|AAK70645.1|  453|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 253 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 300


>U00051-3|AAK70647.1|  413|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform c protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 253 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 300


>U00051-2|AAK70646.1|  458|Caenorhabditis elegans Protein with
           tau-like repeats protein1, isoform b protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 RPISSLCTTKSDI*FSKQTHSVSLIKDVSTYIHLAFYRASFKANSIEN 361
           RPIS +   +SD+  S  T S+  +  ++  ++  F     K  S+ N
Sbjct: 253 RPISKMSRERSDVQKSTSTRSIDNVGRMTPKVNAKFVNVKSKVGSVTN 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,975
Number of Sequences: 27780
Number of extensions: 289703
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)