Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120345.Seq
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 119 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
           Q+ + QQ+ + +   +A+Q    + QQQ +    +  QQ+Q+
Sbjct: 421 QQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 119 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
           Q+   QQ+ + +        N  +PQQQ +    +  QQ+Q+
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQ 457


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 110 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
           H HQ  + Q +A+ +     +QQ    PQQQ +    +  QQ+QR
Sbjct: 815 HHHQSTHPQAQAQAQPQQQQQQQQQQ-PQQQQQ--QQQQQQQQQR 856



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 119  QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
            Q+   QQ+ + +      QQ   +PQQQ +    +  QQ+Q+
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 116 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
           HQ+ +  Q    +A   A+ Q   + QQQ      +  QQ+Q+
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQ 853



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 131  LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDAHAGESI 271
            LQ++ R  A    +QQ   + QQQ +    +  QQ+Q+  A   E +
Sbjct: 1198 LQEQQRNAAMVQQQQQQQQQQQQQQQ--QQQQQQQQQQHQAREREGV 1242


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 132 YNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 245
           Y + P Y+   T+D  ++ S    +N+V  A   K+ E
Sbjct: 454 YKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTE 491


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 APGYVPPTTRDNKMD 185
           +PGYV P T+  K+D
Sbjct: 113 SPGYVQPPTKHQKLD 127


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 216 AIAPYNKSKEPTLTPANLFGTTNVWILFKKLLD 314
           A+   NKSK  T  P N   + ++W   K L +
Sbjct: 301 ALQEMNKSKSITEPPKNCADSGSIWETGKNLFE 333


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 131 LQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQR 244
           +++R R +  +  R  +  + QQQ +   D+  QQ+ R
Sbjct: 72  MREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,394
Number of Sequences: 438
Number of extensions: 5186
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)