Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120344.Seq
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.73 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 365 LNSCFISFSSSVWCTVGSVCS 303
           ++SC   FSSS WC   +  S
Sbjct: 135 VSSCHQGFSSSTWCNYSAYSS 155


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 PSRAISMRPRRCCTPKGICS 221
           P+RA+   P +C  P   CS
Sbjct: 149 PNRALDCDPTQCVLPDCFCS 168


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 208 KEFVQDRPDYKLDAATATLN 267
           K+F  + PD K++  T T+N
Sbjct: 744 KDFKPNNPDIKVEDGTLTIN 763


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 591 TCSVMSSQSDLWPR-TSP 641
           TCS++   + LWP+ T P
Sbjct: 81  TCSMLCGSTQLWPQPTGP 98


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 153 IPLPSRAISMRPRRCCTPKGICSRSARLQT*RGDGY 260
           +P   R  + RP    TP+  C+R++   T  G  Y
Sbjct: 36  VPQGGRRRAARPGVVTTPRWGCARASSATTMGGPRY 71


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 591 TCSVMSSQSDLWPR 632
           TC+++ S+  +WP+
Sbjct: 67  TCNMLCSEPAIWPK 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,648
Number of Sequences: 336
Number of extensions: 2517
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)