Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120344.Seq
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   5.6  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.4  

>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 359 SCFISFSSSVWCTVGSVCSTYCIWSSSARPQFRVAV 252
           SCF+ F   +      +C  +C W      QF V V
Sbjct: 500 SCFVRFIHRLVVNAPDLCGEWCDWYRHCLKQFSVEV 535


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 452 CEQWGKHDSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 300
           CE +G +   A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLY--VAFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 232 DYKLDAATATLNCGRADDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSG 384
           DY+ +   +  NC   D++ +   + TE  V  ++LEK +K  ++ Y   G
Sbjct: 179 DYESNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDG 229


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 201 YSSVVAA*KWPSTGAELNFTVAWASWSRLNADAVHWGNTCS*NQFC 64
           Y  VV + +W      ++  +A ++W+RL+ + V +G   S  Q C
Sbjct: 122 YFGVVNSSEW-DIPKWIDMDIAHSNWNRLSREGVLYGGMKSYRQMC 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,346
Number of Sequences: 5004
Number of extensions: 40504
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)