Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120344.Seq
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    31   0.96 
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
 Frame = +1

Query: 235 YKLDAATATLNCGRADDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHI 414
           YK+    A L C  + + +         TV HT+LEKL+  E    RN  +     F+  
Sbjct: 11  YKIGNGDANLTCKMSYNPKSPIFTDFPDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDER 70

Query: 415 KRALESCLPHCSQN*SVQFVSRFRRI-ATRRCN 510
            R +++         ++ F      +  T  CN
Sbjct: 71  YRVIKNVYMQVQDEEAILFFENHEELEKTFSCN 103


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 24  SCSCAPRCTTRRSCKIGFTNTCCPSAP 104
           SC CAP C    SC +      CP+ P
Sbjct: 45  SCGCAPACPQAPSCPVCPPPQPCPAPP 71


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  CAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 131
           C+P C +    K GF   CC S   R   C+KT
Sbjct: 120 CSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150


>AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.4 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 175 FLCGHDAAVRRKEFVQDRPDYKLDAATATLNCGRADDDQMQYVLQTEPTVHHTLLEKLMK 354
           FL G+D   R     Q   D+  D +  T+       +    V  T PTVH     ++MK
Sbjct: 208 FLMGYDENRRPLTVEQTYEDFSADHSNKTITV-----EAHPSVDLTMPTVHPCKHAEMMK 262

Query: 355 QELRPYRNSGEV 390
           + +  Y  SG+V
Sbjct: 263 RLINQYAESGKV 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,913
Number of Sequences: 27780
Number of extensions: 247958
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)