Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120344.Seq
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28690.1 68417.m04099 expressed protein                             33   0.17 
At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type pept...    29   2.1  
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    29   2.8  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    29   3.6  
At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51...    27   8.4  
At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    27   8.4  
At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family prote...    27   8.4  
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    27   8.4  

>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 280 DDDQMQYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDFEHIKRA 423
           DDD    +L  +PT   T++E      +      GEV C DF H + A
Sbjct: 54  DDDDDCVILDFDPTAKETVIETCETDGVLVVGQKGEVACRDFPHPRHA 101


>At3g10060.1 68416.m01206 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative
           Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans
           isomerases
          Length = 230

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 SLIPLPSRAISMRPRRCCTPKGICSRSARLQT 242
           S IP PSR    +P RC  P   C +  R +T
Sbjct: 17  SSIPFPSRKRQSKPYRCSLPSPGCEKVIRTET 48


>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +1

Query: 193 AAVRRKEFVQDRPDYKLDAATATLNCGRADDDQMQYVLQTEPTVHHTLLEKLMKQELRPY 372
           AAV+++ F     + KLD  TA L        Q     Q E ++    L ++ +++L PY
Sbjct: 24  AAVKKQPFFWPSSEDKLD--TAVLQFQNLKLSQKLEAQQVECSILEDKLSQIKEKQL-PY 80

Query: 373 RNSGEVYCTDFEHIKRALESC 435
            +S +     +E +  ++ESC
Sbjct: 81  NSSLKTVHKSWEKLTASVESC 101


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 256 PSPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYRRLGVLEQAQRRRGALGQHVFV 77
           P PR++C L+ LE++        G I M L         RLG+L+ ++          F 
Sbjct: 336 PIPRELCKLSKLERVYLSNNHLTGEIPMELGD-----IPRLGLLDVSRNNLSGSIPDSFG 390

Query: 76  KPILQLRRVVHLGAH 32
             + QLRR++  G H
Sbjct: 391 N-LSQLRRLLLYGNH 404


>At5g27620.1 68418.m03309 cyclin family protein similar to SP|P51946
           Cyclin H (MO15-associated protein) {Homo sapiens};
           contains Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 336

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 271 GRADDDQMQYVLQTEPTVHHTLLE--KLMKQELRPYRNSGEVYCTDFEHIKRALESCLPH 444
           G  D D+    + ++P   HT  E  KL+       +N       D +HI R L+SCL H
Sbjct: 243 GVIDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLVKNYKCPSEKDMKHINRKLKSCLGH 302

Query: 445 CSQN 456
            S +
Sbjct: 303 SSSH 306


>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 286 DQMQYVLQTEPTVHHTLLEKLMKQELRPYR 375
           D  + +L+ E   HH++L+ +MK E + Y+
Sbjct: 365 DNFRIILRGEDVEHHSVLDDMMKIEEKTYK 394


>At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Sphingomonas sp.]
           GI:3426124; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 378

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 117 ACSKTPKRR*SLIPLPSRAISMRPRRCCTPKGICSRSAR 233
           +C+ TP  R  L    S   S+ P R C P+  C  S R
Sbjct: 4   SCALTPSVRTELFSSSSSKRSIFPARICRPRNKCEISRR 42


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 253 SPRQVCSLADLEQIPFGVQQRR-GRIEMALDGSGIKLYRRLGVLEQAQRRRGALGQHVFV 77
           SP + C+  D+ ++   ++     ++ + +DG  +KL+   G+L+  + R G    H   
Sbjct: 173 SPGEGCNCPDMCRLQHLIEDSTLVKVGIGIDGDSVKLFHDYGLLKPNRIRLGNWEVHPLS 232

Query: 76  KPILQ 62
           K  LQ
Sbjct: 233 KQQLQ 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,490,018
Number of Sequences: 28952
Number of extensions: 227449
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)