Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120343.Seq
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    41   2e-04
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.4  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +3

Query: 510 PQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISF 671
           P GTP  LIP            R  +L +RL ANIIAGHL +++L        G N I+F
Sbjct: 155 PSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITF 214

Query: 672 YXXXXXXXXXXXXXXXESAVAIIQSYVITI 761
                           E  +A IQ+YV  I
Sbjct: 215 IIGFLPITVLVAISLLEFGIAFIQAYVFAI 244


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 159 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 58
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,660
Number of Sequences: 5004
Number of extensions: 29630
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)