Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120343.Seq
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    39   0.003

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
 Frame = +3

Query: 390 PYIFTRTRHXXXXXXXXXXXXXXXXXYG*IKNTNHIFIHN-PQGTPYILIPFXXXXXXXX 566
           PY FT T H                  G  ++  H F    P G P  L PF        
Sbjct: 241 PYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELIS 300

Query: 567 XXXRPGTLAVRLTANIIAGHLLITLLRRTG-----TNISFY--XXXXXXXXXXXXXXXES 725
              R  +L +RL AN++AGH L+ +L          N  FY                 E 
Sbjct: 301 YCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLEL 360

Query: 726 AVAIIQSYVITI 761
            VAI+Q+YV TI
Sbjct: 361 GVAILQAYVFTI 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,285,299
Number of Sequences: 28952
Number of extensions: 132307
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)