Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120342.Seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    33   0.039
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.1  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   5.9  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 546 FHSFLNCLDFLNQFGQFVGFLDLFIAVYNFGDRSNF-VAFDTFHFYTLIYNICL*GV 379
           F S ++CLDF  QF   VGF    + +  F D S+   AF T +  +L  NI L GV
Sbjct: 504 FESEISCLDFSAQFQIGVGFWSKQVMILTFSDNSSISCAFQT-NVPSLPRNIILEGV 559


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 492 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 391
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 173 NSKHVFDHFGCSSNYCFNNYV 235
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,558
Number of Sequences: 5004
Number of extensions: 43391
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)