Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120342.Seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    31   1.1  
06_03_0757 + 24267599-24268882                                         29   3.5  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   8.0  

>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 414 KNETCQMQQSSNGHRNCKQR*KDPKNLRIGRIDLKNLSSLESYETLK-IKLALSK 575
           +N   Q QQ ++ HR  +Q+ ++P      RI +KNL +  + +  K +K   SK
Sbjct: 249 RNAKQQQQQPADAHRKQQQQKQEPSESSSERITMKNLPNPSNQDQRKTLKFGFSK 303


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 559 NWRSANTWLCSAPWK*PSRCWK 624
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 559 NWRSANTWLCSAPWK*PSRCWK 624
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,881,041
Number of Sequences: 37544
Number of extensions: 249817
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)