Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120342.Seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.7  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   3.0  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   3.0  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 545 NSEN*IGAQQIHGYAQHPGNDPAAVGNI*KQSRHSANCRR 664
           NS N   + Q H   QH  + P+AV N    +RH++  RR
Sbjct: 820 NSTNSAYSMQSHQQQQH--HQPSAVSNSNGLARHNSKSRR 857


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 441 SSNGHRNCKQR*KDPKNLRIGRIDLK 518
           SSN  RN KQ  +D    ++G+ D+K
Sbjct: 75  SSNSRRNSKQLQRDELAAKMGKHDMK 100


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 441 SSNGHRNCKQR*KDPKNLRIGRIDLK 518
           SSN  RN KQ  +D    ++G+ D+K
Sbjct: 75  SSNSRRNSKQLQRDELAAKMGKHDMK 100


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,359
Number of Sequences: 2352
Number of extensions: 11072
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)