Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120341.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    78   1e-15
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    29   0.97 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   3.9  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   5.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   6.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   6.9  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   6.9  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   9.1  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   9.1  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   9.1  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +1

Query: 283 EVGATTELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETE 462
           ++GA  E RD+G+  +DG+DV           NDP K TV IY H DVQPA   DGW T+
Sbjct: 53  KLGAKMEKRDIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTD 112

Query: 463 PFEL-VERNEKLYGRG 507
           PF L V+   +++GRG
Sbjct: 113 PFTLTVDNKGRMFGRG 128



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +3

Query: 510 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 638
           TDDKGP++GW+  I A+K  G + PVNL   FE MEE GSEGL
Sbjct: 130 TDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGL 172



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 656 KLKPEGFFDSVDYVCISDNYWLGTTKPCITYGLRGI 763
           + + E +F   D VCISD YWLGT KP +TYGLRG+
Sbjct: 177 RAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGV 212



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 131 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYR 238
           +L ++++ +D+ KD +   L  AV+IPSVS DV  R
Sbjct: 2   SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLR 37


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 517 SSVNLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKL 398
           S VNL    F  ++L+Q++QS +  I +     N+H Y++
Sbjct: 39  SDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRV 78


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 406 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRG 507
           + GH DV P  ++  D W   PF     N  +Y RG
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRG 229


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 433 QVVHPNDHRYKLYFFLDHYPIR 368
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 522 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 623
           GP L ++  TIN Y+GTG  L  +LK + +  E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 8   CIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNKDSYKQ 184
           C  NT+  L +    + FF A +     S  Q+S   AT   +L  IF   D   D   +
Sbjct: 755 CNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTENDLVTE 814

Query: 185 LLKE 196
           L+++
Sbjct: 815 LVEK 818


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 498 WTRFTDDKGPVL--GWLHTINAYKGTGAELPVNLKFIFECMEESGSEGLTA 644
           W     D  PV+   W+HT        A LP+   +I   ME  G  G T+
Sbjct: 314 WDHSIIDAAPVVTFNWVHTFRLRIYGPAVLPMLALYIVNMMEAIGDIGATS 364


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 439 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 311
           SK+ VHPNDH        D +P  ++ +A+V ++  HLL   +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 478 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 350
           ++VQK  S +H+++K++     H  +L  F   Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 385 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 495
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,618
Number of Sequences: 5004
Number of extensions: 75262
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)