Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120341.Seq
         (772 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    27   0.85 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.1  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            25   2.6  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   3.4  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 26.6 bits (56), Expect = 0.85
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
 Frame = -3

Query: 500  PYNFSLRSTSSKGSVSHPSDFKAGCTS-K*P*IQTVFFFGSLPNTPTKTGGS---*TSLP 333
            P+   L  TSSK + +HPS   A   S   P + T    G   NTP          T+  
Sbjct: 726  PHGAPLALTSSKSASTHPSPHPATRASPSSPIVATSSSGGGGSNTPNSAAAPHPYYTAAA 785

Query: 332  SIV*KPTSLNSVVAPTSFNLSCIQ*TYGCNPHDISH 225
                 P SL+S   P   +        G   H + H
Sbjct: 786  MAAASPLSLSSKAPPHPHSALSSHSPVGAGSHHLHH 821


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 71   YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQL 187
            YHQ   +  +    K+  +K   EI K  ++NKD Y ++
Sbjct: 891  YHQRDKLLKQNDELKLEIKKKENEITKVRNENKDGYDRI 929


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 23  LIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKD 172
           LI  P++ Q     P   Q  S SSK   +       L EI+K+  +N D
Sbjct: 662 LIFAPSSNQSSSSTPNAEQSPSASSKDTFSNEYVLTNLDEIYKFEIENDD 711


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 277 ICLASSEPTDAIRTIFH 227
           +C A  EP DA  TIFH
Sbjct: 913 LCDACEEPEDAEHTIFH 929


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,283
Number of Sequences: 2352
Number of extensions: 18272
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)