Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120341.Seq
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 105 3e-23
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 82 4e-16
Z92829-11|CAE17737.1| 257|Caenorhabditis elegans Hypothetical p... 33 0.23
Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protei... 30 1.6
X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein. 30 2.1
U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death abno... 30 2.1
U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death abno... 30 2.1
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 29 4.8
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 29 4.8
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 8.5
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 105 bits (253), Expect = 3e-23
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +1
Query: 256 VHWMQDKLKEVGATTELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPA 435
VHWM++KL+ +G EL D+G Q ++GK V+ +D K T+ +YGHLDVQPA
Sbjct: 46 VHWMKEKLETIGTICELADLGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQPA 105
Query: 436 LKSDGWETEPFELVERNEKLYGRG 507
KSDGW+TEPFELVE++ KL+GRG
Sbjct: 106 AKSDGWDTEPFELVEKDGKLFGRG 129
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +3
Query: 510 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 638
+DDKGPVL W H I A + G +LPVN+KF E MEESGS GL
Sbjct: 131 SDDKGPVLCWFHAIRAAQKNGIDLPVNIKFCLEGMEESGSVGL 173
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +2
Query: 647 LMDKLKPEGFFDSVDYVCISDNYWLGTTKPCITYGLRGIAT 769
L+++ K + F VD+VCISD+YWLGT KPC+TYGLRGI +
Sbjct: 176 LLEREK-DRFLAGVDFVCISDSYWLGTKKPCLTYGLRGICS 215
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 134 LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIR 253
L +F+ +D + D+ K+LL+EAVAI SVS D R + IR
Sbjct: 5 LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIR 44
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 WMQDKLKEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPAL 438
W +D+LK +G T L ++G QT+ G+ + D K T+ IYGHLDVQPA
Sbjct: 47 WARDQLKTLGVETSLWELGQQTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQPAE 106
Query: 439 KSDGWETEPFELVERNEKLYGRG 507
K DGW T PFEL E + KL+GRG
Sbjct: 107 KEDGWNTNPFELTEIDGKLFGRG 129
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +3
Query: 510 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 638
TDDKGPV+ W+ + + G +LP+N+KF+ ECMEES SEGL
Sbjct: 131 TDDKGPVIAWIAVLKVLQTLGIDLPINIKFVLECMEESSSEGL 173
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 686 VDYVCISDNYWLGTTKPCITYGLRGI 763
V + CISDNYWLG KPC+TYGLRGI
Sbjct: 187 VTFSCISDNYWLGRNKPCLTYGLRGI 212
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 143 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIR 253
+FK +D+ +D + LL+E+VAI SVS D R DC+R
Sbjct: 7 VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVR 43
>Z92829-11|CAE17737.1| 257|Caenorhabditis elegans Hypothetical
protein F10A3.16 protein.
Length = 257
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 740 YMASWFPTNSYRIYIHS-QHYQRIPQVSICPLISC 639
Y W+ + YR Y H Q++Q IP++S C +I C
Sbjct: 132 YSVLWY--SDYRKYFHQLQNFQAIPRISFCSIIVC 164
>Z11795-1|CAA77838.1| 130|Caenorhabditis elegans pceh16-1 protein
protein.
Length = 130
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 710 YRIYIHSQHYQRIPQVSICPLISCQAFGTRFLHTFENELQIDRQLSTSALI 558
Y +Y Y+R + S+C QA+ R L E E Q D+ LS + I
Sbjct: 7 YNMYSRKHDYKR-SRKSVCERKPRQAYSARQLDRLETEFQTDKYLSVNKRI 56
>X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein.
Length = 549
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 611 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISKPR 501
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380
>U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death
abnormality protein4, isoform b protein.
Length = 571
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 611 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISKPR 501
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 366 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 402
>U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death
abnormality protein4, isoform a protein.
Length = 549
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 611 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISKPR 501
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 71 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 223
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 11 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 61
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 71 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 223
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 145 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 195
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 63 FLLIINIIQ*VPNKFLQKWQRKKH 134
FL+I+N+ + N+FL+ W KK+
Sbjct: 172 FLMILNLFALLTNQFLRTWNLKKY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,267
Number of Sequences: 27780
Number of extensions: 408940
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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