Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120341.Seq
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    31   1.1  
At2g17530.1 68415.m02028 protein kinase family protein identical...    29   4.5  
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ...    29   4.5  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    28   5.9  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   7.9  

>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 415 HLDVQPALKSDGWETEPFELVERNEKLYGRG 507
           H+DV  A   D WE +PF L    +KL GRG
Sbjct: 101 HMDVVTA-NPDDWEFDPFSLSIDGDKLRGRG 130


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 231 NIVRIASVGSLDARQIEGSRSYYRV----KGCWLSNNRWQRRSTAASFSRRIG**SKKKY 398
           +IV ++     + R ++G     +V     GCW  N   +   T    +  +   S   Y
Sbjct: 233 SIVGLSETPKKNKRNLDGIDMRCKVVDFGNGCWADNKFAEEIQTRQYRAPEVILQSGYSY 292

Query: 399 SLYLWSFGCTTCFEI 443
           S+ +WSF C T FE+
Sbjct: 293 SVDMWSFAC-TAFEL 306


>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to
           flavin-containing monooxygenase FMO3 [Rattus norvegicus]
           GI:12006730; contains Pfam profile PF00743:
           Flavin-binding monooxygenase-like
          Length = 461

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 83  YSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIP 211
           + V SK V+A ++   TLP + + +D  K SY+   +EA+ IP
Sbjct: 337 FEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYE--TQEALGIP 377


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 309 P*LCSSSDFLQFVLHPVNLRMQSAR-YFTSHETDGMATASFNNCL 178
           P LC+   FL     PVN  +   R +  S+ T+G  T  FN+CL
Sbjct: 489 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCL 533


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 623 RFLHTFENELQIDRQLS 573
           RF HT +N+LQ+DR +S
Sbjct: 471 RFYHTTDNQLQLDRDIS 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,515
Number of Sequences: 28952
Number of extensions: 374232
Number of successful extensions: 996
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)