Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120334.Seq
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   168   1e-40
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   115   1e-24
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    34   3.3  
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ...    33   5.8  
UniRef50_Q0UMT5 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   5.8  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q6R3F5 Cluster: Hyaluronidase; n=1; Mycoplasma alligato...    33   7.6  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   7.6  
UniRef50_Q19319 Cluster: Cadherin-4 precursor; n=1; Caenorhabdit...    33   7.6  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  168 bits (409), Expect = 1e-40
 Identities = 77/105 (73%), Positives = 89/105 (84%)
 Frame = +2

Query: 212 GQKPKTYPF*RNSQLKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 391
           G+  K   F     +KPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 392 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG*TTNTE 526
           ++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPSYVG  TN E
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVG--TNNE 170



 Score =  121 bits (292), Expect = 2e-26
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = +3

Query: 33  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 212
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 213 GKNQKLTLFKEIRS*NP 263
           GKNQKLTLFKEIR+  P
Sbjct: 68  GKNQKLTLFKEIRNVKP 84



 Score =  120 bits (288), Expect = 5e-26
 Identities = 52/76 (68%), Positives = 59/76 (77%)
 Frame = +1

Query: 505 GLNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTDXXXXXXXX 684
           G NNEYRISLAKKGGGCP+MN+H+EYT SFESF+++VIW NFYKPIVY+GTD        
Sbjct: 166 GTNNEYRISLAKKGGGCPVMNLHAEYTTSFESFIDKVIWYNFYKPIVYVGTDSAEEEEIL 225

Query: 685 XXXXXXFKIKEFAPDA 732
                 FKIKEFAPDA
Sbjct: 226 LEVSLVFKIKEFAPDA 241


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  115 bits (277), Expect = 1e-24
 Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
 Frame = +2

Query: 212 GQKPKTYPF*RNSQLKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVAN 391
           G+  K   F     +K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE  DV+L   
Sbjct: 66  GKHVKMVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIR 125

Query: 392 LKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV-G*TTNTELV 532
             P + NR Y+FLAQH LR +ED+VP + IR++EP Y+ G T +  L+
Sbjct: 126 CTPNKSNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYLQGNTVSLSLL 173



 Score = 69.7 bits (163), Expect = 7e-11
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +1

Query: 514 NEYRISLAKKGGGCPIMNIHSEYTN-SFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXX 690
           N   +SL K+ GGCP+M I  ++     E FV+R++W +F++PIVYIGTD          
Sbjct: 166 NTVSLSLLKRDGGCPMMKIRQQFNELDLEQFVDRILWCHFHRPIVYIGTDSGEEEEVFIE 225

Query: 691 XXXXFKIKEFAPDA 732
               F IKEFAP+A
Sbjct: 226 ASLTFIIKEFAPEA 239



 Score = 68.5 bits (160), Expect = 2e-10
 Identities = 27/69 (39%), Positives = 49/69 (71%)
 Frame = +3

Query: 48  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 227
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 228 LTLFKEIRS 254
           + +F+E+R+
Sbjct: 71  MVMFQEVRN 79


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 293 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 463
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 623

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 279 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 458
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 459 TT-CPTK*SELWSHPT 503
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>UniRef50_Q0UMT5 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 262

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +3

Query: 372 TCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWAEQRIQN*SG*KGRR 551
           +C SSP   PH+P     +S         T C T  +  W+ P     R+ N       R
Sbjct: 101 SCCSSPARTPHSPCCGVETSQQEAPLAAHTRCSTSRAIGWARPPTVSSRMHNLQA-AAHR 159

Query: 552 LPNHEHPQRVHQL 590
             +   P+R  Q+
Sbjct: 160 DSSEREPRRAFQI 172


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 279 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 446
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


>UniRef50_Q6R3F5 Cluster: Hyaluronidase; n=1; Mycoplasma
           alligatoris|Rep: Hyaluronidase - Mycoplasma alligatoris
          Length = 1438

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 437 HALRWEEDYVPHEVIRIVEPSYVG*TTNTELVW 535
           H  +W E Y P E+ +I E S+VG  + T  VW
Sbjct: 229 HGQKWYELYPPEELEKIKEMSHVGNMSKTRFVW 261


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -1

Query: 90   FCNIYCRTR----KYARWWGCMNNSAY 22
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


>UniRef50_Q19319 Cluster: Cadherin-4 precursor; n=1; Caenorhabditis
            elegans|Rep: Cadherin-4 precursor - Caenorhabditis
            elegans
          Length = 4307

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 487  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 311
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 310  TQKLFAAPVDD*LHGIGFQLRI 245
              +L A P+D  L  +   LRI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,803,175
Number of Sequences: 1657284
Number of extensions: 16994575
Number of successful extensions: 47830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47775
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)