Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120334.Seq
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   8.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.0  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 200 LFRTGQKPKTYPF*RNSQLKPD 265
           L R G+K  ++PF + +++ P+
Sbjct: 200 LLRNGEKHHSFPFRKTTEIPPE 221


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 452 EEDYVPHEVIRIVEPSY 502
           E+ Y+  EV+R+ +P Y
Sbjct: 337 EKKYILQEVVRVKKPHY 353


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 382 EVHVHHLLVVYNGEAVLNKTGPSFT 308
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 382 EVHVHHLLVVYNGEAVLNKTGPSFT 308
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 382 EVHVHHLLVVYNGEAVLNKTGPSFT 308
           EV+ HH  +  +   +  +TG S+T
Sbjct: 62  EVYYHHQTIPQDNPIINTETGLSYT 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,443
Number of Sequences: 336
Number of extensions: 4470
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)