Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120334.Seq
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 32 0.10
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 2.2
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 2.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 5.0
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 6.7
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 6.7
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 8.8
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 8.8
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -1
Query: 642 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQTNSVFVVQP 505
DGFV++LPYD V + L R+G+ + W A F +T + ++ P
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGETKVMPILSP 295
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 505 GLNNEYRISLAKKGGGCPIMNIHS 576
GL+NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 377 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 505
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 623 SHMTRFTNDSNELVYSLWMFMIGQ 552
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 221 PKTYPF*RNSQLKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 361
P T + R+S L +T L ++ S K+F+RET+T + + P V D+
Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 263 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 379
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 232 PFLKKFAVETRYHEVNRQLERQRV 303
P L + T YHEV +QLER V
Sbjct: 594 PALLSGTIPTPYHEVVKQLERDTV 617
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 15 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 158
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -3
Query: 484 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 386
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Frame = -3
Query: 520 IRCSAHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACGFEV-----GDEVHVHHLLV 356
I C A V W + + +V FPP+ + G C + D + +++
Sbjct: 11 INCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVIL 70
Query: 355 VYNGEAVLNKTGPSFTQKLFAAPV 284
+ G ++ GP T PV
Sbjct: 71 GHEGAGIVESVGPQVTTVQVGDPV 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,255
Number of Sequences: 5004
Number of extensions: 70900
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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