Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120334.Seq
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   3.0  
10_07_0019 + 11931519-11932310                                         28   7.0  
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    28   7.0  
03_02_0102 + 5637469-5639064                                           28   7.0  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 78   KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEI 248
            K+  N+   +   KRK+ LVE+ QE EK     D+ +  ED F    + +  T+++++
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQKEAELDTIYRKV 2387


>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 652 RCKRWVCRSSPI*RG 608
           RC+RW CRS P  RG
Sbjct: 39  RCRRWWCRSEPTSRG 53


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 557 GQPPPFLARLILYSLFSPRRMAPQ 486
           G PPPF   L+ YSLF  RR A Q
Sbjct: 425 GYPPPFNVLLVCYSLFE-RRSAQQ 447


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 551 PPPFLARLILYSLFSPRRMAPQF*LLRGARSLLP 450
           P PF     LY L   RR A  + LLR +R L+P
Sbjct: 108 PSPFALDTALYVLGRARRFAHMWDLLRSSRRLVP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,913,927
Number of Sequences: 37544
Number of extensions: 476866
Number of successful extensions: 1218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)