Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120334.Seq
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  34   0.11 
SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.19 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   3.1  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   7.1  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.4  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.4  

>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +2

Query: 137 RT*TRGEAMGSSRQLHGCRRSLFRTGQKPKTYPF*RNSQLKPDTMKLIVNWSGKEFLRET 316
           R+ T     G S+Q+     ++F+ G+K       R   LK     + V W   E  RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT-----REKALKKGIHLVTVLWV--ESCRET 175

Query: 317 WTRFVEDSFPIVNDQEVMDVYLVANLKPTR 406
             R  E+ FP++   E+    L+  LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 45  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 194
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 216 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 73
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 378 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 476
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 473
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 663 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 547
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 182
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 182
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,014,313
Number of Sequences: 59808
Number of extensions: 540173
Number of successful extensions: 1685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)