Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120334.Seq
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    33   0.22 
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    30   1.5  
Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical...    29   4.7  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 279 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 458
           SST +  S  +      + T++P  T K   T TS+PTS   + T A  ++ +       
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220

Query: 459 TT-CPTK*SELWSHPT 503
           TT CPTK      HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 487  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 311
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 310  TQKLFAAPVDD*LHGIGFQLRI 245
              +L A P+D  L  +   LRI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 487  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 311
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 310  TQKLFAAPVDD*LHGIGFQLRI 245
              +L A P+D  L  +   LRI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 487  NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 311
            NS YFVGH  F F  +S   ++++A V A   + G+   V + +V  N E++      S 
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537

Query: 310  TQKLFAAPVDD*LHGIGFQLRI 245
              +L A P+D  L  +   LRI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 590 ELVYSLWMFMIGQPPPFLARLILYSLFSPRRM 495
           E +  +W F+ G PPPF   +++   F P+ +
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVPQML 182


>Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical
           protein C05G5.3 protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 526 FCIRCSAHVGWLHNSDYFVGHV 461
           F I C A +GWL N  YF G V
Sbjct: 15  FTILCGALIGWLINRFYFKGRV 36


>U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical
           protein C50E3.3 protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 410 WGVWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLCRSS 285
           WGVW      GTR +  G  +   C    G KF+ KTL   S
Sbjct: 24  WGVWF----DGTRKTKCGPSELTQCNSLKGFKFNDKTLVSKS 61


>AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical
           protein F56D6.15 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 360 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 461
           K  + C+  PT  P A  PT  T++++N  LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 336 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPTK*SELWSHPT 503
           T +P  TT    T T++PT+    PT  T++ +  T +    TT PT  +   + PT
Sbjct: 179 TTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 336 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPT 473
           T +P  TT    T T++PT+   APT  T++ +  T      TT PT
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPT 218


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +3

Query: 279  SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 458
            S++G   S    L  + + T SP  +T+   T TS P+S+P   T + SSS  T +    
Sbjct: 1960 STSGTNPSSPRSLSQITI-TPSPSQSTES--TQTSLPSSSPSPSTHSVSSSEGTTMSSGA 2016

Query: 459  TTCPTK*SELWSHPT 503
            TT   K S L S  T
Sbjct: 2017 TTSGDKMSFLSSTGT 2031


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,305
Number of Sequences: 27780
Number of extensions: 404540
Number of successful extensions: 1203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)