Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120333.Seq
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    32   0.47 
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552...    29   4.4  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    29   4.4  
01_07_0379 + 43177978-43178572,43178643-43178674                       29   4.4  
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307...    28   7.7  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   7.7  
03_02_0791 + 11222291-11224237                                         28   7.7  

>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
 Frame = +3

Query: 303 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP- 464
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP 
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKPL 401

Query: 465 ---CGFWFSDFGTIK-RAKATLASFL--AFNTETFTNRTIYLATFCKDTCKAIFL*KWNQ 626
              C   F ++ + K R  A+   +L    N    +   I+L T     C  I    W+ 
Sbjct: 402 YSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHLKTLMDGQC--IRWLPWDV 459

Query: 627 TC 632
           TC
Sbjct: 460 TC 461


>12_02_0878 +
           23952594-23952802,23954846-23955083,23955122-23955238,
           23955719-23955818,23956168-23956196,23956477-23956704
          Length = 306

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 569 FGNILQRHLQSDFPLKMEPNVCIHLPDK 652
           FG ++   L+++  LK+EP + + L DK
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYDK 287


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 252 DNVKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEP 413
           D ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P
Sbjct: 252 DLIRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAP 306


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158 CFTLKAAPLLLLYGT-SCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 3
           C+    AP +L YG  SC +  L  L R     ++L   +L L+ +  +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164


>09_04_0706 +
           19627024-19627380,19629945-19629976,19630657-19630751,
           19632116-19632281,19632881-19632938,19633014-19633061,
           19633274-19633464,19633580-19633702,19635174-19635289,
           19635841-19635924,19636009-19636259,19636438-19636647
          Length = 576

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 189 AVVRSIGATRVDKDVVAGANGDNVKRGNFSILNCSCFEGRFLKNEFCRLANLNSLHEW 362
           A +  I ++R    V A A+   V R +   L   CF+   +  +FC   NLN+L+++
Sbjct: 97  AYLEGIDSSRWATAVAAAASMGTVSRLSLKHL-LRCFDFYSIDRKFCNGTNLNTLYQY 153


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 285 NCSCFEGRFLKNEFC 329
           +CSC+ G ++KN FC
Sbjct: 83  DCSCYPGSYMKNGFC 97


>03_02_0791 + 11222291-11224237
          Length = 648

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 563 CSVCECLRIEC*KTGQSCFGTFYGSKVGKPKSAGLAL-HSWTDGVRSLAVGRL 408
           C V  C R+E  + G+ C G  + + +G   +   AL H ++  +  +A  RL
Sbjct: 271 CVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,294,178
Number of Sequences: 37544
Number of extensions: 428817
Number of successful extensions: 1328
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)