Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120333.Seq
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)                 31   1.1  
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            28   5.9  
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     28   7.9  
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      28   7.9  

>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 348 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWF 479
           S   +ED+LY +   N + L+PA+ + +  I  R Q + C  WF
Sbjct: 10  SYQAYEDELYGQTSPNSLSLQPAS-RLSAKILHRFQNRSCASWF 52


>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 58  SDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHDETGV 174
           SDDN+   +R + G D      +N NG  +NVK+ + GV
Sbjct: 109 SDDNKGDIDRGDGGNDDSSGGNDNRNG-GYNVKNYDNGV 146


>SB_19562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 484 SENQNPQGLPCTLGPMVYVVLPLAG 410
           S + NPQ +P T  P + VV+P AG
Sbjct: 47  SVSPNPQAMPMTSRPQLKVVIPSAG 71


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +3

Query: 165 NGRNVLFYAVVRSIGATRVDKDVVAGANGDNVK-RGNFSILNCSCFEGRFLK----NEFC 329
           +G N+  +A  ++  +T + K        +N+K        NC CF  +FLK    N FC
Sbjct: 479 HGNNLKDFAKQKAFTSTHISKWKELFPEMENLKCHCTRHSKNCGCFSKQFLKNARVNHFC 538

Query: 330 RLANLNSLHEWEDKL 374
            L   +S  E+  ++
Sbjct: 539 CLQQCDSPEEYARRM 553


>SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 186 YAVVRSIGATRVDKDVVAGANGDNVKRGNFSILNCSCFEG 305
           Y + RSI ++  DKDV+A     + KR  F +L C   +G
Sbjct: 97  YELARSIISSSYDKDVIALERMLDGKRDGFYVLCCQISKG 136


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 150
           +K GD+  D + P  E+ ES EDQ+   +N    AA N
Sbjct: 826 KKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 156
           R +G + S DN+    R+E+   ++L P   N  +  +VK
Sbjct: 127 RNLGSTGSSDNRTHYRRIETKAPRRLEPLKPNTASRTSVK 166


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 309 ICLRNNYNSVLKSCLVSHYRHLLLPQHLCQLAWLQLNGRR 190
           ICL N+++    +C V HYR L L      L W+ +   R
Sbjct: 526 ICLENSHSKTF-ACRVVHYRKLQLTAAQTLLKWVAITVTR 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,457,153
Number of Sequences: 59808
Number of extensions: 509905
Number of successful extensions: 1494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)