Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120333.Seq
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    32   0.42 
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    32   0.42 
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    32   0.42 
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    32   0.42 
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    31   0.56 
L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    28   6.8  
AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 438 IGPRVQGKPCGFWFSDFGTIKRAKATLASFLAFNTETFTNRTIYLATF 581
           +GPR QG   G  F+ FG++ R  A L +   FN+  +T  ++ + TF
Sbjct: 403 LGPRQQGTMQGV-FAFFGSVGRCAAPLVTTFFFNSSGYTWVSVEMLTF 449


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 382 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 224
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF LS  +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 382 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 224
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF LS  +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 382 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 224
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF LS  +  TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 34  KRKIGDSSSDDNQPKRERVESGEDQQ 111
           K K GDSSSDD+ P+R+R E   D +
Sbjct: 13  KFKRGDSSSDDSGPERDRDEDDSDNE 38


>L14710-4|AAK84537.3|  526|Caenorhabditis elegans Hypothetical
           protein K02D10.1a protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 357 EWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKATLASFLAF 536
           EW + L  +P K + VL   + KT      +++    GF       +      LA +L  
Sbjct: 38  EWINLLLEDPSKKVFVLTNNSTKTLEQYMKKIE--KLGFGHLGRNNVISPAIVLADYLKS 95

Query: 537 NTETFTNRTIYL 572
           N + F+   +YL
Sbjct: 96  NADKFSGEYVYL 107


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
 Frame = -2

Query: 370 LSSHSCKLFKLASRQNSF---------FKNLPSKQLQFSIEKLPRFTLS-PFAPATTSLS 221
           L+SHSCK+F++ +   SF         +  +P + +  S   +P   LS P  P T SL 
Sbjct: 11  LNSHSCKIFQICTSSQSFDLELFNSSLYNLVPIRFVPISTLLVPPIRLSRPAFPLTISLI 70

Query: 220 TRVAP 206
             V P
Sbjct: 71  HSVHP 75


>AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical
           protein T08B1.1 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 656 CSYPANECTRLVPFSKENRFASVFAKCCQIYCSVCECLR-IEC*KTGQSCFGTFYGSKVG 480
           C++    CT L P  +   F S+  +  Q+ C   + +  IE    G S  G+  G  +G
Sbjct: 98  CNFIKQNCTNLAPVKQNLEFFSIVGQ-FQLICDDSDKVEYIEVIMAGSSLIGSIIGGHMG 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,869
Number of Sequences: 27780
Number of extensions: 383681
Number of successful extensions: 1254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)