Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120333.Seq
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.49 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.6  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   4.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.6  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   6.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 87  SFPLWLVVVAARIANLAFSCHATDVRC 7
           +FP+W V + AR+  L+   +    RC
Sbjct: 904 TFPVWQVTLNARLVELSLGSNPWSCRC 930


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 498 LWFQSRKTKIRRACPAL 448
           +WFQ+R+TK ++  P L
Sbjct: 54  IWFQNRRTKWKKQNPGL 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 421 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 320
           P+ GS  +   SGS  NLSS S      ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  + S + ++ KRER  S E + +   +NN
Sbjct: 57  RKYRERSKERSRDKRERERSKERKIISSLSNN 88


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  + S + ++ KRER  S E + +   +NN
Sbjct: 57  RKYRERSKERSRDKRERERSKERKIISSLSNN 88


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIISSLSNN 88


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 446 WTDGVRSLAVGRLQHHD 396
           WTDG+  +A+  +  HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ +RER  S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRRERERSKEPKIVSSLSNN 88


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 600 LCKCLCKMLPNIL 562
           +CKC CK   N L
Sbjct: 77  ICKCFCKRRTNTL 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 600 LCKCLCKMLPNIL 562
           +CKC CK   N L
Sbjct: 525 ICKCFCKRRTNTL 537


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 436 VYVVLPLAGSNTTIFLSGSGYNLSS 362
           +Y+VLP+      IF++G   N+S+
Sbjct: 50  LYIVLPITVIYAVIFVTGLVGNVST 74


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ ++ER +S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ ++ER +S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 37  RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 132
           RK  ++S + ++ ++ER +S E + +   +NN
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 IVCTNGKTSCIPSPIKISWC 405
           +V ++G  SC+PS   ++ C
Sbjct: 150 LVFSSGSVSCVPSVKHVAKC 169


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 395  YRGVGAGQRQDYVHHRSKSA 454
            Y G+G G   D ++ R+K +
Sbjct: 1440 YNGIGTGDPSDMLNTRTKGS 1459


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 373 NLSSHSCKLFKLASRQNSFFKNLPSKQLQ 287
           N    S +L K A   N F KNL   Q++
Sbjct: 84  NKRDRSRELIKAAILANDFMKNLELTQIR 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 139  AAFNVKHDETGVMCYFTPSSVQLEPRELTKMLWQEQMAIM*NEA 270
            +A NV +  T +     P  VQ + +       Q+Q  I+ N+A
Sbjct: 952  SASNVTNVTTNLTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQA 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,109
Number of Sequences: 438
Number of extensions: 5125
Number of successful extensions: 34
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)