Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120332.Seq
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   1.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 606 PLSLCSACCLDVPPSISQITKV*GIRKFCSSHRFGMSCL 490
           P +L S+   DV   +  +TK+ G    CSS +   +CL
Sbjct: 3   PHALISSDFHDVIKPLINLTKIFGFLPVCSSQKGQKTCL 41


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 568 WYIQATCATQGQGLYEGLDWLSNELAK 648
           WY Q     + Q LYE  +++S  L K
Sbjct: 293 WYCQTATMEEKQELYEFSNFVSQHLPK 319


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 VETVEYKNISFTVWDVGGQDKIRPL 343
           +E +  KNI  TV + G   K++PL
Sbjct: 540 LEELNLKNIDLTVLESGAFCKMQPL 564


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 433 QLIFGFCYSFSVTRIYNKYQAL 368
           QL+F FCY   +  +Y  Y ++
Sbjct: 142 QLVFVFCYFIYLFTVYYIYYSV 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,632
Number of Sequences: 336
Number of extensions: 3500
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)