Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120332.Seq
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   4.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   4.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
 Frame = +3

Query: 507 TDDCCRTYE-CP 539
           TD CCRT++ CP
Sbjct: 55  TDACCRTHDMCP 66


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
 Frame = +3

Query: 507 TDDCCRTYE-CP 539
           TD CCRT++ CP
Sbjct: 60  TDACCRTHDMCP 71


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
 Frame = +3

Query: 507 TDDCCRTYE-CP 539
           TD CCRT++ CP
Sbjct: 60  TDACCRTHDMCP 71


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 311 DVGGQDKIRPLWRH 352
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,311
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)