Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120331X.Seq
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    33   0.026
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         31   0.14 
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    30   0.32 
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    26   3.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.1  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +2

Query: 95  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLT 247
           CIFC I         L E      F DI P S+ H L IPK H   +  L+
Sbjct: 3   CIFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELS 53


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 128 GTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLT 247
           G+++ Y       F ++KP    H+L IP+R +  +K LT
Sbjct: 13  GSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLT 52


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 137 ILYEDDEVCVFRDIKPASRFHILTIPK-RHIEDVKSL 244
           ++Y DD+V + RD+ P S+ H+L + +  H+  V  L
Sbjct: 51  VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPL 87


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 543 TTTELVFFSMTESSVNLYKKNPFFKI 620
           T   +   SM   S + YKK+PFFK+
Sbjct: 138 TDIRVALNSMDRPSYSSYKKDPFFKV 163


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 309  LSKYSSCLCKRHGQSFK*IKICG 377
            L +YSS LC+ H Q F  I++ G
Sbjct: 3292 LEQYSSFLCEFHHQKFDEIEVPG 3314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,512
Number of Sequences: 5004
Number of extensions: 43893
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)