Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120331X.Seq
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    43   2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    40   0.001
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    36   0.027
06_03_1321 + 29308538-29308588,29308728-29308827,29308939-293091...    27   9.4  

>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +2

Query: 95  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKS 241
           C+FC I    +    LYEDD      D KP S  H L IPKRH   +++
Sbjct: 73  CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121


>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 98  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPK 217
           IF  I  K   + ++YED++V  FRDI P +  H+L IPK
Sbjct: 46  IFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK 85


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 98  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPK 217
           +F  I  K   + ++++D++V  FRDI P +  HI+ IPK
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK 234


>06_03_1321 +
           29308538-29308588,29308728-29308827,29308939-29309156,
           29309251-29310591
          Length = 569

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 454 FYYCLTTFRIFYNIITCLTYI 392
           F YCL  + I YN++T LT +
Sbjct: 54  FCYCLAYYGIMYNLVTYLTTV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,204
Number of Sequences: 37544
Number of extensions: 230100
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)