Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120331X.Seq
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    36   0.024
AL161711-4|CAC44301.2|  301|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    29   2.1  
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    29   2.1  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 98  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAARNYVSK 274
           +F  I  K    +I++EDDE   F D+ P +  H L IPKR I+ +++   +    + K
Sbjct: 22  LFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGK 80


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 95  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSA 253
           C FC+I    +  + L E+    V  DIKP ++ H L + K+HI     LT A
Sbjct: 11  CKFCDIVKNKKELQ-LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVA 62


>AL161711-4|CAC44301.2|  301|Caenorhabditis elegans Hypothetical
           protein Y10G11A.1 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 200 ILTIPKRHIEDVKSLTSAARNYVS 271
           +L++P+ H++D+KSLT   +N VS
Sbjct: 10  LLSLPQVHVKDIKSLTDKLQNIVS 33


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 137 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSA 253
           I Y      VF ++KP +  H+L  PKR +  +  LT A
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDA 349


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 137 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSA 253
           I Y      VF ++KP +  H+L  PKR +  +  LT A
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDA 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,314
Number of Sequences: 27780
Number of extensions: 245271
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)