Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120331X.Seq
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   KACKF*SQKTSCSCLVKPKCQQRHHLNRPV 98
           K C+     T   C+   KC +RH   RPV
Sbjct: 91  KECELSPNSTIAVCVCMRKCPRRH---RPV 117


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 513 QIILHGILQLTTTELVF 563
           ++ + G  QLT TELVF
Sbjct: 98  EVTVTGTYQLTETELVF 114


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 274 FTYVVPCGARQALDIFDMPFRYSQNMKTTGRFDV 173
           F Y+ P  A    D+   P+R    ++  G F V
Sbjct: 200 FGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSV 233


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 494 IIAFISANYFTRYSS 538
           II F   +YFT+Y S
Sbjct: 291 IIQFAVVHYFTKYGS 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,941
Number of Sequences: 438
Number of extensions: 3632
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)