Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120331X.Seq
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16566.1 68417.m02507 histidine triad family protein / HIT fa...    56   1e-08
At1g31160.1 68414.m03812 zinc-binding protein, putative / protei...    42   4e-04
At3g56490.1 68416.m06282 zinc-binding protein, putative / protei...    40   0.001
At5g48545.1 68418.m06002 histidine triad family protein / HIT fa...    36   0.017
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    28   5.9  

>At4g16566.1 68417.m02507 histidine triad family protein / HIT
           family protein contains Pfam domain, PF01230: HIT family
           (histidine triad protein family)
          Length = 146

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/57 (43%), Positives = 33/57 (57%)
 Frame = +2

Query: 95  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAARNY 265
           CIFC I      T +L+ D++V  F+DIKPA++ H L IPK HI  V  L     +Y
Sbjct: 8   CIFCEIVRNPTTTRLLHTDEKVIAFQDIKPAAQRHYLVIPKEHIPTVNDLQRRDEDY 64


>At1g31160.1 68414.m03812 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 187

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = +2

Query: 98  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAARNYV 268
           IF  I  K   ++I+YED+ V  FRDI P +  H+L IPK   + + SL  A   +V
Sbjct: 77  IFDKIIAKEIPSDIVYEDENVLAFRDINPQAPVHVLVIPKLR-DGLTSLGKAEPRHV 132


>At3g56490.1 68416.m06282 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 147

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +2

Query: 98  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPK 217
           IF  I +K   + +++EDD+V  FRDI P    HIL IPK
Sbjct: 37  IFDKIISKEIPSTVVFEDDKVLAFRDITPQGPVHILLIPK 76


>At5g48545.1 68418.m06002 histidine triad family protein / HIT
           family protein contains Pfam profile PF01230:HIT domain;
           contains Prosite motif PS00892: HIT family signature.
          Length = 197

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +2

Query: 95  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRH 223
           C+FC I         LYEDD      D  P S  H L IPK H
Sbjct: 50  CVFCKIIRGESPCLKLYEDDMCLCILDTNPLSHGHSLIIPKLH 92


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 454 FYYCLTTFRIFYNIITCLTYISIGVYPHIFI 362
           FYYCL  +  F++  + +T+IS G+ P++ +
Sbjct: 533 FYYCLIIYAAFWSGSSIVTFIS-GLIPNVMM 562


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,039
Number of Sequences: 28952
Number of extensions: 208529
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)