Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120330.Seq
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      26   0.38 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.88 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.7  

>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 382 RANHICDFVTIVGRKKVWVSFGQVVRNV 465
           R  H+   + +V R  VWVSF Q  +NV
Sbjct: 19  RGEHMVGTIVVVVRG-VWVSFNQTAQNV 45


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 663 YFFC*QLNLNVHHIFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNF 520
           YF+C  +  NVH +F+  +    +T  +L Y   I      + C+  F
Sbjct: 58  YFYCVSITFNVHLLFL--LCSGYFTVHLLFYCPFIIFTVHFLLCTYYF 103


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 573 YLTHIRRYKKIIRCSLNFITLLRLSIIGKVNKFLS*YISYNLPKRNPHFLS 421
           +L H+R+  + ++ +   I L + + I K  KFL   ++ N  K +P  +S
Sbjct: 471 HLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPEKIS 521


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,677
Number of Sequences: 336
Number of extensions: 4254
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)