Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120330.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0267 + 3584117-3584922,3585331-3585361                           29   4.1  
03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564...    29   4.1  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   9.4  

>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 470 LDTFRTTCPKETHTFFRPTIVTK-SQMWFARNTYLN*NMKSEQL*TCDAH 324
           +DT R+T  KE HT     I  K  QM F+   +       E+   C+AH
Sbjct: 161 IDTIRSTLKKEPHTKCHSHIEYKPHQMSFSNEGHFRREANEEEFLICNAH 210


>03_02_0104 +
           5645285-5645677,5645990-5646034,5646225-5646454,
           5646549-5646624,5646705-5646781,5646960-5646990,
           5647058-5647210,5647287-5647421,5647526-5647606
          Length = 406

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 615 KQICGGHLNL---IVNKKSTLTYKYSSVANLLFNNYKYHDNIASNN--NAENLK 761
           ++I GGH+N+   +VN    L Y ++   N+L+    Y D   S N  N E L+
Sbjct: 159 QEIQGGHINMRGKLVNWMEELVYGFNLWDNILYLAVSYVDRFLSRNVVNRERLQ 212


>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
            21464265-21464353,21464508-21464595,21464698-21464907,
            21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 633  VHHIFVWGIVGKLYTFRIL 577
            + H+FVWG VG  Y F I+
Sbjct: 1055 IQHLFVWGSVGTWYLFIIV 1073


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,293
Number of Sequences: 37544
Number of extensions: 343942
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)