Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120330.Seq
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    30   1.6  
Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and trans...    29   4.8  
U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical p...    28   6.3  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical...    28   6.3  
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    28   8.4  

>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  DNDYNSNRFSDHMSETGYYMFVVKKSEVKPFEIIFAKYVSNVVYEYTN 158
           D D++ N F ++++  GY  F  K      F+ +FAK  +  +++Y+N
Sbjct: 31  DLDHSEN-FDEYLTAKGYGWFTRKLVTFATFKKVFAKNANKNLFDYSN 77


>Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical
           protein K02C4.4 protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 120 AKYVSNVVYEYTNNYYMVDNRVFVVTF 200
           AK   N+ YEY ++Y+M D+  F+  F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450


>AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and
           transglutaminase domainprotein protein.
          Length = 723

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 120 AKYVSNVVYEYTNNYYMVDNRVFVVTF 200
           AK   N+ YEY ++Y+M D+  F+  F
Sbjct: 424 AKTDGNLRYEYDDHYFMTDSEEFIYEF 450


>U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical
           protein F45E4.7b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 72  CNNQSRTYGRRTC 34
           CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 72  CNNQSRTYGRRTC 34
           CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 72  CNNQSRTYGRRTC 34
           CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867


>AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical
           protein Y38H6C.20 protein.
          Length = 736

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 254 IPHSQDVCNDETAAQNCKKCHFVDV-HHTFKAALTSYFNLDMYYAQTTFVTLLQSLGERK 430
           +P S DV          K  HFVDV   T    +   F+L     ++T+   + S+ + K
Sbjct: 92  LPMSHDVIESSRRPPKLKSVHFVDVGQETTAIVMELLFDLLNMKLRSTYELRVGSIYDTK 151

Query: 431 CGFLL 445
           C  +L
Sbjct: 152 CDRML 156


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 15  DNDYNSNRFSDHMSETGYYMFVVKKSEVKPFEIIFAKYVSNVVYEYTN 158
           D D++ N F ++++  GY  F  K      F+ +F K  +  +++Y+N
Sbjct: 29  DLDHSEN-FDEYLTAKGYGWFTRKLVTFATFKKVFTKTSNKNLFDYSN 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,282
Number of Sequences: 27780
Number of extensions: 367568
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)