Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120328.Seq
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.073
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 2.7
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.7
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 3.6
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 4.8
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 6.3
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 6.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.073
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 511 TARLRTPSVQECRASPADFGFPTLEP*NVPKATLASFLAFNTETFTNTTIYLATF 675
T + T +++ AS G PT P N P T + T T+T T + +TF
Sbjct: 817 TTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTF 871
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 778 TNQHVGSLVLFLSGK*MHTFGSIFKGKSLCKCLCKMLPNILLC 650
T Q G +++FL+G+ S + LC+ L K +P I+LC
Sbjct: 623 TTQPAGDILVFLTGQDEIELMSE-NMQELCRILGKRIPEIILC 664
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 122 ATKRKIGDSSSDDNQPKRERVES 190
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 618 FFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSE 761
FFS + +HK F +L+RHL D K ++C P K T++
Sbjct: 203 FFSYKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITTD 249
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 500 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 411
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 752 FVLIRQMNAHVWFHFQRKIALQVSLQ-NVAKYIVVF 648
FVL+RQM + H QR L +++Q + YI +F
Sbjct: 318 FVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIF 353
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 551 QALRILVFRLWNHKTCQKQLWP 616
Q L IL+ +LWNHK + + P
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSP 240
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 126 LNARLAIRAATTTSQSGKEWK 188
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 376 LNCSCFEGRFLKNEFCRLANLNSLHEWEDKLYPEPDKNIVVLEPATARLRTP 531
LN SC + RFL+N L +++++ + KL PEP +N+ L+ T L P
Sbjct: 759 LNLSCTDYRFLEN----LIDVDTIQNF-FKL-PEPVQNVTDLQSDTVLLVNP 804
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 467 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 366
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,478
Number of Sequences: 5004
Number of extensions: 87682
Number of successful extensions: 291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -