Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120328.Seq
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801... 34 0.18
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 30 2.2
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 29 5.0
12_02_0878 + 23952594-23952802,23954846-23955083,23955122-239552... 29 6.6
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 6.6
01_07_0379 + 43177978-43178572,43178643-43178674 29 6.6
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 8.8
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 28 8.8
02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492 28 8.8
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 28 8.8
>04_04_1639 +
34978498-34978585,34979049-34979343,34980070-34980107,
34980655-34980788,34980868-34980973,34981451-34981536,
34981962-34982150,34982477-34982641,34982898-34982921,
34983235-34983348,34983605-34983850
Length = 494
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 352 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEPATARLR 525
++ NF++L SC EG+F E L L S LH +E + P + L P L
Sbjct: 254 IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAPLQKDLE 312
Query: 526 TPSVQ 540
TPS +
Sbjct: 313 TPSYE 317
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 86 LEPQQTAHVGSMATKRKIGDSSSDDNQPKR--ERVES-GEDQQLVPYNNNN-GAAFNVKH 253
+ PQ A S A KR D S+++ P+R +R+ S G + +P+ G +VK
Sbjct: 745 INPQFIASFASAAGKRCNQDLDSEESDPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKV 804
Query: 254 AKRA*CAILRRRPFNWSH 307
A+R + L R F W++
Sbjct: 805 AQRRFESRLGRHSFGWTY 822
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 609 FGQFFSIQYGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEPT 767
F FFS+Q ++ KH ++ +LQ HL+S + P+ + K + PT
Sbjct: 232 FASFFSLQAAELLKHPHLQPYVLQVHLKSSPARNIIPSHQSPIDKVKKMTFPT 284
>12_02_0878 +
23952594-23952802,23954846-23955083,23955122-23955238,
23955719-23955818,23956168-23956196,23956477-23956704
Length = 306
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 663 FGNILQRHLQSDFPLKMEPNVCIHLPDK 746
FG ++ L+++ LK+EP + + L DK
Sbjct: 260 FGQVVSEDLENEIKLKIEPELAVELYDK 287
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 209
+H R +S + +ARL R A TS SG+ W+ V + W
Sbjct: 174 HHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 252 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 97
C+ AP +L YG SC + L L R ++L +L L+ + +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 28.3 bits (60), Expect = 8.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 346 INVKRGNFSILNCSCFEGRFLKNEFC 423
+ + + +CSC+ G ++KN FC
Sbjct: 72 MGICKNTIGSFDCSCYPGSYMKNGFC 97
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -2
Query: 744 YPANECTRLVPFSKENRFASVFAKCCQIYCCVCECLRIEC*KTGQSCFWHVLWFQSRKTK 565
+ AN T++VP ++ R +S F+ C++ +CFW V W RK +
Sbjct: 85 HAANALTKVVPILQK-RLSSSFSDRCRMAVSAGVIW-------SSACFWKVAW---RKLQ 133
Query: 564 IRRACPALLDRW 529
+ + PA RW
Sbjct: 134 LTTSPPATPSRW 145
>02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492
Length = 534
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 270 HYARFACFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESP 139
H +RF + P L + T W+ P++ WLS L SP
Sbjct: 395 HVSRFLTPPPQQPPQQLSFSTRDWAGPVAYCQAKNWLSDELMSP 438
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 116 SMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHAK 259
S KR++ SS D+ R G+D ++V +++ AA ++ AK
Sbjct: 232 SFQPKRRVASSSDSDSDTGGSRRRGGDDGEVVRCTSSSTAAGHLMRAK 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,187,578
Number of Sequences: 37544
Number of extensions: 565526
Number of successful extensions: 1684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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