Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120328.Seq
(898 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 31 1.7
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_37246| Best HMM Match : RVT_1 (HMM E-Value=3.6e-05) 28 8.9
SB_24156| Best HMM Match : HMG_box (HMM E-Value=2.6) 28 8.9
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 28 8.9
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 28 8.9
SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016) 28 8.9
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 32.3 bits (70), Expect = 0.55
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 89 EPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHAKR 262
EP +++H ++ S +D+ + KR+R E G+ + +N G + +K K+
Sbjct: 166 EPSESSHADKRNRSGELTQSQNDNKEKKRQRKEVGKSVESDNNDNKGGRSRQIKKIKK 223
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 716 FHFQRKIALQVSLQNVAKYIVVFVNVSVLNAKKLAKVAFGTFYGSK 579
F + + QN K + VN S++NA KLAKV G YG K
Sbjct: 393 FKVAKALLAHCETQNKLKKVFEKVNASLMNAAKLAKV-IGNKYGIK 437
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +2
Query: 467 CIPSPIKISWCWSRQRQDYVHHRSKS-AGQALRILVFRLWNHKTCQKQLW--PVF*HSIR 637
C P+ I+++W + Q ++H +K+ A R W H T + W P +
Sbjct: 117 CHPTKIQVNWHHPSKTQANLYHPTKTQANWYHRTKTQANWYHPTKTQANWYHPSKTQAYL 176
Query: 638 RHSQTQQYIWQHFAKTLA 691
H Q W H +KT A
Sbjct: 177 CHPTKTQANWNHPSKTRA 194
>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 71 NTSIRLEPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAA 238
NT+ +PQ + AT IG+S +DDN K + ED+ + N A+
Sbjct: 396 NTTEMRDPQAHKTASTSATAASIGESVNDDNN-KSASQQVNEDKDATSQSANKDAS 450
>SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -2
Query: 741 PANECTRLVPFSKENRFASVFA--KCCQIYCCVCECLRIEC*KTGQSCFWHVLWFQSRKT 568
P +C RL P KE ++ KC Q +C +CE L + F HV +
Sbjct: 64 PNIDC-RLSPIIKEKESCNMIKCPKCAQCFCYICEMLLGTDELEAHTSFPHV----NPSI 118
Query: 567 KIRRACPALLDRWCT*SCRCRL 502
RRA L+ R RCR+
Sbjct: 119 LARRAAGYLMTRMPPSRGRCRI 140
>SB_37246| Best HMM Match : RVT_1 (HMM E-Value=3.6e-05)
Length = 843
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 605 AFGTFYGSKVGKPKSAGLALHSWTDGVRSLAVAGSNTTIF 486
AF F G + K + G AL + D +R LAV G N ++
Sbjct: 200 AFHVFVGVYLRKYPNEGPALMKYGDVIRDLAVRGQNWQLY 239
>SB_24156| Best HMM Match : HMG_box (HMM E-Value=2.6)
Length = 269
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 605 AFGTFYGSKVGKPKSAGLALHSWTDGVRSLAVAGSNTTIF 486
AF F G + K + G AL + D +R LAV G N ++
Sbjct: 200 AFHVFVGVYLRKYPNEGPALMKYGDVIRDLAVRGQNWQLY 239
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 244
+K GD+ D + P E+ ES EDQ+ +N AA N
Sbjct: 826 KKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 160 VVAARIANLAFSCHATD--VRCLLWFKSN*SVSQNIRYIINMDGSVV 26
+ A + F C+AT + ++W K + R++IN DGS+V
Sbjct: 572 ITALTNTQVTFRCNATGTPMPSVIWTKDGQVLVSGPRHVINKDGSIV 618
>SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 700
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 605 AFGTFYGSKVGKPKSAGLALHSWTDGVRSLAVAGSNTTIF 486
AF F G + K + G AL + D +R LAV G N ++
Sbjct: 166 AFHVFVGVYLRKYPNEGPALMKYGDVIRDLAVRGQNWQLY 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,626,196
Number of Sequences: 59808
Number of extensions: 673346
Number of successful extensions: 2241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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