Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120328.Seq
(898 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 0.23
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 24 1.6
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 24 2.2
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 6.6
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 6.6
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 6.6
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 6.6
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 6.6
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 6.6
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 6.6
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 6.6
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 6.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 6.6
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 8.7
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 8.7
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 8.7
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 181 SFPLWLVVVAARIANLAFSCHATDVRCLLWFKSN*SVSQNIRYIIN 44
+FP+W V + AR+ L+ + RC + + VS N +++
Sbjct: 904 TFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVSDNAHKVVD 949
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 24.2 bits (50), Expect = 1.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 591 LWFQSRKTKIRRACPAL 541
+WFQ+R+TK ++ P L
Sbjct: 54 IWFQNRRTKWKKQNPGL 70
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 2.2
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHAKRA*CAILRRRPFN 298
RK ++S + ++ ++ER +S E + + +NN +N + K+ C R+ +N
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNNYN--YNNNNYKKLYCNNYRKLYYN 110
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHAKRA*CAILRRRPFN 298
RK ++S + ++ ++ER +S E + + +NN +N + K+ C ++ +N
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNNYN--YNNNNYKKLYCNNYKKLYYN 110
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKHAKRA*CAILRRRPFN 298
RK ++S + ++ ++ER +S E + + +NN +N + K+ C ++ +N
Sbjct: 57 RKYRETSKERSRDRKEREKSKEHKIISSLSNNYN--YNNNNYKKLYCNNYKKLYYN 110
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK + S + ++ KRER S E + + +NN
Sbjct: 57 RKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK + S + ++ KRER S E + + +NN
Sbjct: 57 RKYRERSKERSRDKRERERSKERKIISSLSNN 88
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 6.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIISSLSNN 88
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 6.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 482 SGSGYNLSSHSCKLFKLASRQNS 414
SGS NLSS S ASR+N+
Sbjct: 603 SGSAENLSSGSNNQTSSASRENT 625
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNN 226
RK ++S + ++ +RER S E + + +NN
Sbjct: 57 RKYRETSKERSRDRRERERSKEPKIVSSLSNN 88
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 694 LCKCLCKMLPNIL 656
+CKC CK N L
Sbjct: 77 ICKCFCKRRTNTL 89
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 8.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 694 LCKCLCKMLPNIL 656
+CKC CK N L
Sbjct: 525 ICKCFCKRRTNTL 537
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,666
Number of Sequences: 438
Number of extensions: 6753
Number of successful extensions: 30
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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