Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120328.Seq
(898 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63500.1 68414.m07180 protein kinase-related low similarity t... 32 0.59
At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOA... 31 1.0
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 31 1.0
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.2
At3g05040.1 68416.m00547 expressed protein weak similarity to ex... 29 4.2
At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransfer... 29 5.5
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 29 5.5
At3g05390.1 68416.m00589 expressed protein ; expression supporte... 29 5.5
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi... 28 7.3
At2g29980.2 68415.m03647 omega-3 fatty acid desaturase, endoplas... 28 9.7
At2g29980.1 68415.m03646 omega-3 fatty acid desaturase, endoplas... 28 9.7
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 28 9.7
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 28 9.7
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 28 9.7
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 28 9.7
>At1g63500.1 68414.m07180 protein kinase-related low similarity to
protein kinase [Arabidopsis thaliana]; contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 422
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 352 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS-LHEWEDKLYPEPDKNIVVLEPATARLRT 528
++ N +L SC EG+F ++ L L S ++E + P P + + P L T
Sbjct: 195 IRDRNIQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLET 254
Query: 529 PSVQ 540
PS Q
Sbjct: 255 PSHQ 258
>At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [gi:5020219] from Simmondsia chinensis
Length = 341
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 201 WSSPLSTLSRFGWLSSLLESPILRLVAMLPTC 106
W S L +LS ++SS L +LRL+++LP C
Sbjct: 12 WISALISLSYCYYISSKLSKGVLRLLSILPVC 43
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 567 WFSDFGTIKRAKSNFGQFFSIQYGDIHKHNNIFG 668
W+ F I FFS QYGDIH+ N FG
Sbjct: 1330 WWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFG 1363
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like ABC
transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 618 FFSIQYGDIHKHNNIFG 668
F S QYGDIH+ N+FG
Sbjct: 1384 FISSQYGDIHEEINVFG 1400
>At3g05040.1 68416.m00547 expressed protein weak similarity to
exportin 5 [Homo sapiens] GI:10444427
Length = 522
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -3
Query: 626 AKKLAKVAFGTFYGSKVGKPKSAGLALHSWTDGVRSLA--VAGSNTTI 489
+K ++ A G+F G+K G+ +++ + +W G+R V G +TTI
Sbjct: 243 SKGVSVYADGSFEGTKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTI 290
>At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransferase
family protein / wax synthase family protein contains
similarity to wax synthase similarity to wax synthase
wax synthase - Simmondsia chinensis, PID:g5020219
similar to wax synthase [gi:5020219] from Simmondsia
chinensis
Length = 342
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -2
Query: 201 WSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAV 100
W S + ++S +LS+ +++ + RL+++LP CA+
Sbjct: 12 WISAIISISYCYYLSTGIKAGVFRLLSVLPVCAL 45
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 71 NTSIRLEPQQTAHVGSMATKRKIGDSSSDDNQPKRER-------VESGEDQQLVPYNNNN 229
++ + + P+ T G+ KRK + D N+ K++ VE GE+++ NN
Sbjct: 75 DSRLSISPETTLGTGNFK-KRKFDTETKDCNEKKKKMTMNRDDLVEEGEEEKSKITEQNN 133
Query: 230 GAAFNVKHAK 259
G+ ++K K
Sbjct: 134 GSTKSIKKMK 143
>At3g05390.1 68416.m00589 expressed protein ; expression supported
by MPSS
Length = 463
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 271 CYFTPSSVQLEPRELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSLH 450
C S +P + + LW+ NV+ GN+ N +C + K + + + +
Sbjct: 226 CLTRASMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEME 285
Query: 451 EWEDK 465
+ +DK
Sbjct: 286 KEKDK 290
>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 TPR Domain (5
copies)
Length = 1064
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = -2
Query: 291 GRRRKIAHYARFACFTLKAAP--LLLLYGTSC----WSSPLSTLSRFGWLSSLLE 145
G RK+ LK +P + +LYG + WS L FGW +SLLE
Sbjct: 203 GSYRKVTFGVELFEQALKISPQNISVLYGLASGLLSWSKECINLGAFGWAASLLE 257
>At2g29980.2 68415.m03647 omega-3 fatty acid desaturase, endoplasmic
reticulum (FAD3) identical to SP:48623
Length = 288
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 309 AWLQLNGR-RRKIAHYARFACFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPIL 133
+W+ L R +K+ H R +T+ P+L C+ SP S F SSL
Sbjct: 152 SWVPLPERVYKKLPHSTRMLRYTVPL-PMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSER 210
Query: 132 RLVAMLPTC 106
+L+A TC
Sbjct: 211 KLIATSTTC 219
>At2g29980.1 68415.m03646 omega-3 fatty acid desaturase, endoplasmic
reticulum (FAD3) identical to SP:48623
Length = 386
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -2
Query: 309 AWLQLNGR-RRKIAHYARFACFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPIL 133
+W+ L R +K+ H R +T+ P+L C+ SP S F SSL
Sbjct: 152 SWVPLPERVYKKLPHSTRMLRYTVPL-PMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSER 210
Query: 132 RLVAMLPTC 106
+L+A TC
Sbjct: 211 KLIATSTTC 219
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 155 DDNQPKRERVESGEDQQLVPYNNNNGAAFN 244
D+++ + E G + +LVP NNNN N
Sbjct: 572 DEDEEEENEEEEGGEFELVPSNNNNNKTTN 601
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -3
Query: 530 GVRS--LAVAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEKLPR 357
GVRS A+ N + + G S C LF+L + NLP+ L+ I ++PR
Sbjct: 120 GVRSRGFALLLDNLKVIVVNVG---SGGDCSLFQLMKMTTTTMSNLPTDLLEEIISRVPR 176
Query: 356 FTLIAI 339
+ A+
Sbjct: 177 KYMRAV 182
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 77 SIRLEPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVP 214
S R+E Q + K+K G+ SS ++ V S +Q ++P
Sbjct: 820 SSRIENHQNSEKKKKKKKKKKGEGSSKHKSRRQNEVASASEQVIIP 865
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 77 SIRLEPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVP 214
S R+E Q + K+K G+ SS ++ V S +Q ++P
Sbjct: 820 SSRIENHQNSEKKKKKKKKKKGEGSSKHKSRRQNEVASASEQVIIP 865
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,514,930
Number of Sequences: 28952
Number of extensions: 461046
Number of successful extensions: 1396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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