Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120326.Seq
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.12 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = -2

Query: 249 MNSSRKNIEKMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENK 70
           +N  ++  E+  FT   L +L   F+K  + +         K+    S +++W K    K
Sbjct: 122 VNPRKQRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAK 181

Query: 69  KHNESISSRNNCASKHTFS 13
              +    +N  AS+ T S
Sbjct: 182 CRQQLQQQQNKSASRTTTS 200


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 IFARRVHQTVPQFRTIMQYLQTYYN 303
           +F   V +T+PQ    +  L TY+N
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFN 279


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 IFARRVHQTVPQFRTIMQYLQTYYN 303
           +F   V +T+PQ    +  L TY+N
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFN 279


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 IFARRVHQTVPQFRTIMQYLQTYYN 303
           +F   V +T+PQ    +  L TY+N
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFN 279


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 501 RLQNESDVINENNLITQIFVQFFYNLICDKAYSLY 605
           +LQN S +IN  N  T+  +  F   +   +Y L+
Sbjct: 115 KLQNVSLIINYENQRTRSRIHLFVRYVFVTSYLLF 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,703
Number of Sequences: 336
Number of extensions: 4623
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)